The ultimate goal of the JAX 4D Nucleome Center is to deliver a Nucleome Positioning System (NPS) for the generation of complex maps of chromatin interaction network in the...
Alzheimer’s disease (AD) is a major cause of dementia, disability and death in the elderly. Despite recent advances in our understanding of basic biological mechanisms...
NOD-scid IL2rgnull (NSG) and NOD-Rag1null IL2rgnull (NRG) mice support heightened levels of engraftment with human cells and tissues. These engrafted mice allow research on...
The Center for Systems Neurogenetics of Addiction (CSNA) aims to identify the biological relationships between the stages and patterns of cocaine addiction and behaviors that...
The Jackson Laboratory maintains and distributes chromosome-aberration stocks that provide mouse models for Down syndrome, as well as the study of...
Resource lists and describes mouse models for ocular research at JAX.
FusorSV is an open source framework that takes a data mining approach to assess performance and merge callsets from an ensemble of Structural Variant...
This Strain Survey GEM holds data for a gene expression survey of 26 inbred mouse strains. Users can perform simple or advanced queries to find...
The Gene Ontology (GO) project is a collaborative effort to address the need for consistent descriptions of gene products across databases.
Allows users to integrate gene sets across species, tissue and experimental platform.
Genetic Resource Science initiates and develops resource-generating research. Our team: identifies and implements innovative technologies for genetic research; makes and...
Online tool used to find genes and transcripts in designated regions. Users can either enter a range manually or click and drag to select a region of...
This software is used to fit Hidden Markov Models in Stochastic models for heterogeneous DNA sequences.
Integrating multi-track Hi-C data for genome-scale reconstruction of 3D chromatin structure
ATAC-seq is a new protocol to capture open chromatin sites by performing adaptor ligation and fragmentation of open chromatin regions. Due to its efficiency in requirement of...
The IMSR is a searchable online database of mouse strains, stocks, and mutant ES cell lines available worldwide, including inbred, mutant, and...
J/maanova is an open sourced desktop application developed with the aim of simplifying the analysis of microarray experiments.
J/qtl is a Java graphical user interface (GUI) for the popular QTL data analysis software R/qtl.
To understand disease mechanisms and ultimately develop effective therapies for AD, it is essential we apply state-of-the-art approaches to generate...
The Jackson Laboratory Cancer Center (JAXCC) is a National Cancer Institute-designated Cancer Center complemented by institutional education, resource and service initiatives...
The JAX Cre Repository's aim is to provide the scientific community with a centralized, comprehensive set of well-characterized Cre-driver lines and related information...
Scientists in the JAX Center for Genetics of Fertility and Reproduction work on a variety of scientific problems of relevance to fertility and...
The goal of the CGD is to evaluate the role of genome-wide organization in mammalian biology by developing detailed maps of genetic interactions that encompass allelic...
In this project we will create mice carrying the human pathogenic mutations identified by our collaborators. The mutations will be introduced onto both a standard, stable...
The JAX Colony Management System (JCMS) is a free and supported multi-user relational database system for managing research mouse colonies.
Our specialized collection areas include: genetics, inbred mice, animal health and husbandry, development, embryology, complex traits, immunology, cancer, molecular biology,...
Scientists around the world are working to generate a targeted knockout mutation for every gene in the mouse genome through the Knockout Mouse...
MAANOVA is a set of functions written in Matlab for the analysis of variance on microarray data.
These programs are based on marker regression and are designed for detecting covariate effects and interactions from inbred line cross data.
MAV-seq (Management, Analysis, Visualization of Sequence data) is an interactive, user friendly, cross platform, secure, encrypted, automated, customized, centralized,...
MoDIS links to the Pathbase.net website to provide detailed information and annotated images of similar lesions in laboratory mice, making it a...
International database resource for the laboratory mouse, providing integrated genetic, genomic, and biological data.
International database resource for the laboratory mouse, providing integrated genetic, genomic, and biological data.
Mice harboring spontaneous mutations have long been a major source for animal models of human genetic disorders, particularly mendelian diseases. The Mouse Mutant Resource...
This resource is a collaborative standardized collection of measured data on laboratory mouse strains and populations. Includes baseline phenotype data sets as well as...
Custom genome browser provides detailed answers to questions on the haplotype diversity and phylogenetic origin of the genetic variation underlying...
This resource provides mouse models for facial, dental, eye, ear and skull development research, as well as mouse models of human craniofacial...
The Mouse Tumor Biology (MTB) Database supports the use of the mouse as a model system of hereditary cancer by electronic access to a variety of...
MouseCyc is a new, manually curated database of both known and predicted metabolic pathways for the laboratory mouse. The database records for 1,060...
MouseMine is a powerful new system for online access to mouse data from MGI (Mouse Genome Informatics).
The Mutant Mouse Resource and Research Center (MMRRC) distributes and cryopreserves scientifically valuable, genetically engineered mouse strains and mouse ES cell lines with...
Our goal is to focus our diverse expertise in biology and genomics on the problems and disorders associated with aging.
For over half a century Oak Ridge National Laboratory generated and maintained a diverse collection of mouse stocks. A large part of this collection derived from induced...
OncoCL, an ontology to describe cancer cell types
We offer a growing number of mouse lines expressing proteins that activate, inhibit or detect neuronal activity.
The Parkinson’s Disease Mouse Model Resource characterizes and distributes new mouse models of Parkinsonism and Parkinson’s disease.
Serves as a centralized resource for mouse models and tools that have been validated for use in preclinical studies of peripheral neuropathy.
Pseudomarker is a set of programs written in MATLAB for the analysis of QTL data from inbred line crosses.
PubArray is a desktop application that allows you to turn the analyzed results of your microarray experiment into a web application which is...
70+ QTL studies in a number of research areas, gathered and curated by the Churchill Group QTL Archive initiative.Each QTL study has phenotype and...
QuIN (Query tool for Interaction Networks, available at quin.jax.org) is a tool for visualizing, annotating, and querying chromatin interactions derived from technologies...
R/maanova is an extensible, interactive environment for Microarray analysis.
R/qtl is an extensible, interactive environment for mapping quantitative trait loci (QTL) in experimental crosses.
350 million people are affected by rare and orphan disease. The Rare and Orphan Disease Center conducts research to better treat these diseases.
Produce and distribute mutant models for infertility and to investigate underlying causes in order to identify new genes and pathways contributing to...
Random Forest Regression for Epigenetic Length prediction
The center enables scientists to harness the full power of genomic technologies and computational strategies and use them to analyze the human genome to discover new and...
Interested in a career at The Jackson Laboratory? We empower and accelerate JAX research and discoveries with a broad array of shared scientific...
SeqFold is a tool for RNA secondary structure prediction from experimental data.
High quality single nucleotide polymorphism (SNP) database with more than 8 Million SNPs from 74 strains of laboratory mice, drawn from several...
The SMSR maintains mice that are important tools for genetic analysis of complex diseases, including consomic strains.
We collect, cryopreserve and distribute mouse strains important to research in type 1 diabetes.
