Sergii Domanskyi, Ph.D.

Assistant Computational Scientist

Development of novel computational, statistical and mathematical approaches for the analysis of Next Generation Sequencing (NGS) data.

During the last year of my post-doctoral research at Michigan State University I have developed a computational framework DECNEO for discovery of the combinations of receptors from a large collection of single cell RNA sequencing datasets. The single cell transcriptomics data processing and cell type annotations, which are crucial inputs for DECNEO, have been addressed in my previous work, Digital Cell Sorter, where the methods for single cell data processing, Hopfield landscapes visualization, anomaly detection and automatic identification of cell phenotypes were developed.

My objective is to continue developing bioinformatics algorithms and encapsulate these novel methods in reliable and ready-to-use software. My strong background in the physical, computational sciences, and large-scale computational techniques allow me to model biological systems in multidisciplinary projects. Given my background in software design for many applications, I will be able to contribute to a sustainable cyberinfrastructure for researchers in bioinformatics, and for the biological sciences in general. In my future research, I anticipate developing algorithms to explore analysis of Next Generation Sequencing (NGS) data.

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Sergii Domanskyi on ORCID

Education and experience

Education

Clarkson University, Potsdam, NY
Ph.D., Physics
Adv: Prof. Vladimir Privman
2012-2018

National Technical University of Ukraine, Kyiv, Ukraine
Master of Science, Physics
Adv: Prof. Vyacheslav Gorshkov
2010-2012

National Technical University of Ukraine, Kyiv, Ukraine
Bachelor of Science, Physics
2006-2010

Experience:

Assistant Computational Scientist
The Jackson Laboratory, Bar Harbor, ME
2021-present

Post-Doctoral Research Associate
Michigan State University, East Lansing, MI
2018-2021

Visiting Graduate Student Researcher
Los Alamos National Laboratory, Los Alamos, NM
2015, 2016

Research and Teaching Assistant
Clarkson University, Potsdam, NY
2012-2018

Software Designer
Consulting and Information Technology, LLC, Kyiv, Ukraine
2011-2012