2014 Computational Sciences Publications

Q4 - 2014
  1. Fujiwara Y, Matsumoto H, Akiyama K, Srivastava A, Chikushi M, Ann Handel M, et al. An ENU-induced mutation in the mouse Rnf212 gene is associated with male meiotic failure and infertility. Reproduction (Cambridge, England). 2015;149(1):67-74. Epub 2014/10/25. doi: 10.1530/rep-14-0122. PubMed PMID: 25342176; PubMed Central PMCID: PMCPMC4248014.
  2. Won J, Charette JR, Philip VM, Stearns TM, Zhang W, Naggert JK, et al. Genetic modifier loci of mouse Mfrp(rd6) identified by quantitative trait locus analysis. Experimental eye research. 2014;118:30-5. Epub 2013/11/10. doi: 10.1016/j.exer.2013.10.020. PubMed PMID: 24200520; PubMed Central PMCID: PMCPMC4153418.
  3. West PR, Amaral DG, Bais P, Smith AM, Egnash LA, Ross ME, et al. Metabolomics as a tool for discovery of biomarkers of autism spectrum disorder in the blood plasma of children. PloS one. 2014;9(11):e112445. Epub 2014/11/08. doi: 10.1371/journal.pone.0112445. PubMed PMID: 25380056; PubMed Central PMCID: PMCPMC4224480.

Q3 – 2014

  1. Ananda G, Takemon Y, Hinerfeld D, Korstanje R. Whole-genome sequence of the C57L/J mouse inbred strain. G3. 2014;4(9):1689-92. Epub 2014/07/24. doi: 10.1534/g3.114.012997. PubMed PMID: 25053706; PubMed Central PMCID: PMCPMC4169161.
  2. Ananda G, Hile SE, Breski A, Wang Y, Kelkar Y, Makova KD, et al. Microsatellite interruptions stabilize primate genomes and exist as population-specific single nucleotide polymorphisms within individual human genomes. PLoS genetics. 2014;10(7):e1004498. Epub 2014/07/18. doi: 10.1371/journal.pgen.1004498. PubMed PMID: 25033203; PubMed Central PMCID: PMCPMC4102424.
  3. Inaki K, Menghi F, Woo XY, Wagner JP, Jacques PE, Lee YF, et al. Systems consequences of amplicon formation in human breast cancer. Genome research. 2014;24(10):1559-71. Epub 2014/09/05. doi: 10.1101/gr.164871.113. PubMed PMID: 25186909; PubMed Central PMCID: PMCPMC4199368.

Q2 – 2014

  1. Menghi F, Inaki K, Woo X, Kumar PA, Grzeda KR, Malhotra A, et al. The tandem duplicator phenotype as a distinct genomic configuration in cancer. Proceedings of the National Academy of Sciences of the United States of America. 2016;113(17):E2373-82. Epub 2016/04/14. doi: 10.1073/pnas.1520010113. PubMed PMID: 27071093; PubMed Central PMCID: PMCPMC4855596.
  2. Fairfield H, Srivastava A, Ananda G, Liu R, Kircher M, Lakshminarayana A, et al. Exome sequencing reveals pathogenic mutations in 91 strains of mice with Mendelian disorders. Genome research. 2015;25(7):948-57. Epub 2015/04/29. doi: 10.1101/gr.186882.114. PubMed PMID: 25917818; PubMed Central PMCID: PMCPMC4484392.
  3. Srivastava A, Philip VM, Greenstein I, Rowe LB, Barter M, Lutz C, et al. Discovery of transgene insertion sites by high throughput sequencing of mate pair libraries. BMC genomics. 2014;15:367. Epub 2014/06/03. doi: 10.1186/1471-2164-15-367. PubMed PMID: 24884803; PubMed Central PMCID: PMCPMC4035081.
  4. Hosur V, Johnson KR, Burzenski LM, Stearns TM, Maser RS, Shultz LD. Rhbdf2 mutations increase its protein stability and drive EGFR hyperactivation through enhanced secretion of amphiregulin. Proceedings of the National Academy of Sciences of the United States of America. 2014;111(21):E2200-9. Epub 2014/05/16. doi: 10.1073/pnas.1323908111. PubMed PMID: 24825892; PubMed Central PMCID: PMCPMC4040562

Q1 – 2014

  1. Ananda G, Mockus S, Lundquist M, Spotlow V, Simons A, Mitchell T, et al. Development and validation of the JAX Cancer Treatment Profile for detection of clinically actionable mutations in solid tumors. Experimental and molecular pathology. 2015;98(1):106-12. Epub 2014/01/07. doi: 10.1016/j.yexmp.2014.12.009. PubMed PMID: 25562415; PubMed Central PMCID: PMCPMC4481190
  2. Sproule TJ, Bubier JA, Grandi FC, Sun VZ, Philip VM, McPhee CG, et al. Molecular identification of collagen 17a1 as a major genetic modifier of laminin gamma 2 mutation-induced junctional epidermolysis bullosa in mice. PLoS genetics. 2014;10(2):e1004068. Epub 2014/02/20. doi: 10.1371/journal.pgen.1004068. PubMed PMID: 24550734; PubMed Central PMCID: PMCPMC3923665.
  3. Potter CS, Wang Z, Silva KA, Kennedy VE, Stearns TM, Burzenski L, et al. Chronic proliferative dermatitis in Sharpin null mice: development of an autoinflammatory disease in the absence of B and T lymphocytes and IL4/IL13 signaling. PloS one. 2014;9(1):e85666. Epub 2014/01/28. doi: 10.1371/journal.pone.0085666. PubMed PMID: 24465642; PubMed Central PMCID: PMCPMC3897490
  4. Paigen B, Marion MA, Stearns TM, Harper JM, Svenson KL. The effect of culling on health and physiology of mouse litters. Laboratory animals. 2014;48(3):207-15. Epub 2014/02/18. doi: 10.1177/0023677214521606. PubMed PMID: 24532826; PubMed Central PMCID: PMCPMC4490120.
  5. Morgan JL, Svenson KL, Lake JP, Zhang W, Stearns TM, Marion MA, et al. Effects of housing density in five inbred strains of mice. PloS one. 2014;9(3):e90012. Epub 2014/03/25. doi: 10.1371/journal.pone.0090012. PubMed PMID: 24658028; PubMed Central PMCID: PMCPMC3962340