Protocol 14304: Pyrosequencing Assay - Tg(Ab1TL)1Gru
Version 5.0

Notes

This genotyping assay uses pyrosequencing technology and is run on the Biotage PSQ 96MA. The Jackson Laboratory is not posting the complete details of our pyrosequencing genotyping assays as the primers for pyrosequencing cannot be used for sequencing using more traditional methods. The wild type and mutant nucleotides and the flanking DNA sequence are provided below.
The genotyping protocol(s) presented here have been optimized for reagents and conditions used by The Jackson Laboratory (JAX). To genotype animals, JAX recommends researchers validate the assay independently upon receipt of animals into their facility. Reaction cycling temperature and times may require additional optimization based on the specific genotyping reagents used.

Expected Results

Transgene = T
Internal positive control = A

Sequence

CACTGGGGCCCTGGAACTTGTCCCTTATATCCAGAGGAATTGGCTGAAGTAGACT
GTAGACACTCAGCTCTATTCCCCAGGGGCACAGTCTGAGTCTGCCTGGAGCAAG
ATGTTGAGCGGCATCGGGGGCTGCGTGCTTGGGGTGATCTTCCTCGGGCTTGGC
CTTTTCATCCGTCACAGGAGTCAG(A/T)AAGGTGAGGAGCTCTGGAGAACTGGGT
GGTGGGCTGTGCCACAGGAAGGAGCCGGACTGGGGGTAGTGGGCTGTGCTGC
AGGAAGGAGCCTGGCTGCAGGTGGGAGGAAATGAAGGTCCCAGGAGAGACA
CTGGGATCTGATTTTGCTGGTTATGTGACCACCACAGAGCCATGGTGGAGCTCA
TTCTGTGACTTCTGTCCTTGTCCACCACTGTCACTGTCTCCTTTCCAGAAGCTTC
CGGCAATGAAAATGCATAGGCCTT

JAX Protocol

Protocol Primers

Primer 5' Label Sequence 5' → 3' 3' Label Primer Type Reaction Note
poIMR0193 GCG TGC TTG GGG TGA TCT T
poIMR0194 Fluorophore GTC TCT CCT GGG ACC TTC ATT TC
poIMR0195 CAT CCG TCA CAG GAG T

Reaction A

Component Final Concentration
ddH2O
Kapa 2G HS buffer 1.00
MgCl2 2.00
dNTPS-kapa 0.20
poIMR0193 0.50
poIMR0194 0.50
Glycerol 5.00
Kapa 2G HS taq polym 0.01
DNA

Cycling

Step Temp °C Time Note
1 94.0 --
2 94.0 --
3 65.0 -- -0.5 C per cycle decrease
4 68.0 --
5 -- repeat steps 2-4 for 10 cycles
6 94.0 --
7 60.0 --
8 72.0 --
9 -- repeat steps 6-8 for 28 cycles
10 72.0 --
11 10.0 -- hold
JAX uses a very high speed Taq (~1000 bp/sec), use cycling times recommended for your reagents.

Strains Using This Protocol

This is the only strain that uses this protocol.