The Jackson Laboratory

Protein Sciences

What We Do

Protein Sciences (PS) comprises services and expertise related to mass spectrometric characterization of biomolecules, antibody generation, and protein production/isolation. Methods in each of these areas can be customized to meet project needs. PS supports investigator projects from conceptualization and planning through to the collection and final reporting of data. The Mass Spectrometry and Protein Chemistry Service (MSPC) employs multiple platforms for the high-throughput mass spectrometric identification of proteins, small-molecule metabolites, and lipids in homogenized liquid samples or in conjunction with spatial mass spectrometry imaging in situ. The Monoclonal Antibody and Protein Production Service (MAPP) performs monoclonal and polyclonal antibody generation, recombinant protein production, and chromatographic isolation of both recombinant proteins and endogenous proteins.  

Services & Technologies Offered

Mass Spectrometry and Protein Chemistry

  • Enhanced plasma proteomics using the SEER SP100 Proteograph XT  (>5000 Proteins)
  • High-throughput Biocrates Quant 500 XL Targeted Lipidomics/Metabolomics Assay (912 Lipids Included)
  • Discovery proteomics, metabolomics, and lipidomics 
  • Targeted proteomics, metabolomics, and lipidomics 
  • Single-cell proteomics 
  • Affinity enrichment proteomics (e.g., immunoprecipitation of proteins, post-translational modification enrichment, etc.) 
  • Custom screening using targeted assays 
  • Discovery mass spectrometry imaging (proteomics, lipidomics, metabolomics) 
  • Targeted mass spectrometry imaging (proteomics, lipidomics, metabolomics) 

Monoclonal Antibody and Protein Production

  • Custom mouse monoclonal antibody production: generation of antigen; mouse immunizations; generation and screening of hybridoma cell lines; isolation of appropriate antibody isotype 
  • Facilitate nanobody and polyclonal antibody production in other species 
  • Antibody validation pipeline 
  • Custom recombinant protein production in vitro: generation of protein expression construct (with or without affinity tags); expression in cultured bacteria or mammalian cell line; protein purification  
  • Protein purification: affinity chromatography; fast protein liquid chromatography (FPLC) using reverse-phase, ion-exchange, or size-exclusion columns 
  • ELISA, western blotting, and other biochemical assays as requested 

Project Spotlight

PS collaborates with a variety of investigators on a diverse array of projects that utilize our expertise. In our current collaboration with the laboratory of Dr. Kristen O’Connell, the MSPC is performing metabolomics, discovery proteomics, single-cell proteomics, and discovery mass spectrometry imaging (proteomics, lipidomics, and metabolomics) to better understand the complex cellular changes that occur in healthy aging brains and distinguish them from the changes that occur in Alzheimer’s disease. This collaboration takes advantage of the newest mass spectrometry equipment in PS: the Bruker timsTOF Ultra 2 Mass Spectrometer and the Thermo Scientific Orbitrap Astral Mass Spectrometer. JAX was awarded NIH funding to support the purchase and installment of the Ultra 2 in October 2024, making PS one of the first recipients of this cutting-edge, highly sensitive mass spectrometer that enables analysis of proteins and metabolites in single cells. The collaboration and Ultra 2 were recently highlighted on Mainebiz and EurekAlert.

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