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Notes
Mut = G (BALB/cJ, 129/J) Gpi1<a>
WT = A (C57BL6/J) Gpi1<b>
The genotyping protocol(s) presented here have been optimized for reagents and conditions used by The Jackson Laboratory (JAX).
To genotype animals, JAX recommends researchers validate the assay independently upon receipt of animals into their facility.
Reaction cycling temperature and times may require additional optimization based on the specific genotyping reagents used.
Expected Results
Sequence
SEQ:
GACCAGTCTAGCTCTAGGGTCTACCGTGCTCCTCATTGTCTCTTTCATTTCTAG(a/g)ATCGGGCGGTGCTGCATGTGGCCCTTCGGAACCGGTCCAACACACCCATCAAGGTGGACGGCAAAG
JAX Protocol
Protocol Primers
| Primer | 5' Label | Sequence 5' → 3' | 3' Label | Primer Type | Reaction | Note |
|---|---|---|---|---|---|---|
| 44227 | TAA TGG ATG CCT GGA CCT GT | Forward | A | |||
| 65915 | TCT GCT TAC CTG GCA GAA AGA | Reverse | A |
Reaction A
| Component | Final Concentration |
|---|---|
| ddH2O | |
| Kapa 2G HS buffer | 1.30 X |
| MgCl2 | 2.60 mM |
| dNTPS-kapa | 0.26 mM |
| 44227 | 0.50 uM |
| 65915 | 0.50 uM |
| Glycerol | 6.50 % |
| Kapa 2G HS taq polym | 0.03 U/ul |
| DNA |
Cycling
| Step | Temp °C | Time | Note |
|---|---|---|---|
| 1 | 94.0 | -- | |
| 2 | 94.0 | -- | |
| 3 | 65.0 | -- | -0.5 C per cycle decrease |
| 4 | 68.0 | -- | |
| 5 | -- | repeat steps 2-4 for 10 cycles (Touchdown) | |
| 6 | 94.0 | -- | |
| 7 | 60.0 | -- | |
| 8 | 72.0 | -- | |
| 9 | -- | repeat steps 6-8 for 28 cycles | |
| 10 | 72.0 | -- | |
| 11 | 10.0 | -- | hold |
JAX uses a very high speed Taq (~1000 bp/sec), use cycling times recommended for your reagents.
JAX uses a 'touchdown' cycling protocol and therefore has not calculated the optimal annealing temperature for each set of primers.
Strains Using This Protocol
| Stock Number | Strain Name |
|---|---|
| 000600 | B6-Gpi1b x B6CBCa Aw-J/A-T(7;15)9H Gpi1a/J |
| 000377 | B6.C-H22c Gpi1a/(HW38)ByJ |
| 000123 | B6.C-H24c Gpi1a/(HW54)ByJ |
| 000797 | B6.CAST-Gpi1a/EiJ |
| 001622 | B6.Cg-Gpi1a Hbath-J |
| 002074 | B6.Cg-Gpi1a Hbbd H1b/DehJ |
| 001317 | B6.Cg-Gpi1a Thy1a Igha/J |
| 039112 | B6.Cg-Ptprca Pepcb KitW-41J Gpi1a/IslabMmjax |
| 000909 | B6CBy-Gpi1a/Gpi1b/J or Gpi1a-m1/Gpi1b/J |
| 002800 | C3.Cg-Gpi1a/J |
| 10 strains use this protocol | |