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Mutant = 166 bp
Heterozygote = 166 bp and 214 bp
Wild type = 214 bp
X-linked
>chrX:99975525+99975738 214bp GAGGACCTCCTCCCTCATTC CCTCTGCCTCAGTCCTTCAC
The Common F primer (primer 56860) anneals over the nucleotide sequence containing mouse genomic variation rs228176850.
Primer | 5' Label | Sequence 5' → 3' | 3' Label | Primer Type | Reaction | Note |
---|---|---|---|---|---|---|
56860 | GAG GAC CTC CTC CCT CAT TC | Common | A | |||
56861 | CCT CTG CCT CAG TCC TTC AC | Wild type Reverse | A | |||
56862 | CGC AGA AGA GAA TCC GTC TC | Mutant Reverse | A |
Component | Final Concentration |
---|---|
ddH2O | |
Kapa 2G HS buffer | 1.30 X |
MgCl2 | 2.60 mM |
dNTP KAPA | 0.26 mM |
56860 | 0.50 uM |
56861 | 0.50 uM |
56862 | 0.50 uM |
Glycerol | 6.50 % |
Dye | 1.00 X |
Kapa 2G HS taq polym | 0.03 U/ul |
DNA |
Step | Temp °C | Time | Note |
---|---|---|---|
1 | 94.0 | -- | |
2 | 94.0 | -- | |
3 | 65.0 | -- | -0.5 C per cycle decrease |
4 | 68.0 | -- | |
5 | -- | repeat steps 2-4 for 10 cycles (Touchdown) | |
6 | 94.0 | -- | |
7 | 60.0 | -- | |
8 | 72.0 | -- | |
9 | -- | repeat steps 6-8 for 28 cycles | |
10 | 72.0 | -- | |
11 | 10.0 | -- | hold |