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Optimized using Platinum High Fidelity Taq (Invitrogen) with a corresponding buffer.
Use Kapa2G Fast HS Ready Mix (2X) diluted to 1X and add Kapa2G Robust HS 5U/ul Taq.
Use 2ul Taq per 100ul amplification mix of Kapa2G + primers. S Cook 4-23-21
| Primer | 5' Label | Sequence 5' → 3' | 3' Label | Primer Type | Reaction | Note |
|---|---|---|---|---|---|---|
| moIMR0008 | GAC GAG TTC TTC TGA GGG GAT CGA TC | A | ||||
| moIMR0813 | CAC GAC TGG CCT CTA CTG CTC TTG AC | A | ||||
| moIMR0814 | TCT CTC CCA CCT CGC ACG CCG AAT C | A |
| Component | Final Concentration |
|---|---|
| ddH2O | |
| Kapa 2G HS buffer | 1.30 X |
| MgCl2 | 2.60 mM |
| dNTP KAPA | 0.26 mM |
| moIMR0008 | 0.50 uM |
| moIMR0813 | 0.50 uM |
| moIMR0814 | 0.50 uM |
| Glycerol | 6.50 % |
| Dye | 1.00 X |
| Kapa 2G HS taq polym | 0.03 U/ul |
| DNA |
| Step | Temp °C | Time | Note |
|---|---|---|---|
| 1 | 94.0 | -- | |
| 2 | 94.0 | -- | |
| 3 | 65.0 | -- | -0.5 C per cycle decrease |
| 4 | 68.0 | -- | |
| 5 | -- | repeat steps 2-4 for 10 cycles (Touchdown) | |
| 6 | 94.0 | -- | |
| 7 | 60.0 | -- | |
| 8 | 72.0 | -- | |
| 9 | -- | repeat steps 6-8 for 28 cycles | |
| 10 | 72.0 | -- | |
| 11 | 10.0 | -- | hold |
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