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Mutant = ~320 bp
Heterozygote = ~320 bp and 241 bp
Wild type = 241 bp
>chr6:113025964-113026204 241bp AAGGGAGCTGCAGTGGAGTA CAGGACAACGCCCACACA
Primer | 5' Label | Sequence 5' → 3' | 3' Label | Primer Type | Reaction | Note |
---|---|---|---|---|---|---|
24500 | CAG GAC AAC GCC CAC ACA | Wild type Reverse | A | Rosa | ||
42561 | GAC CGG AAG AGG TAC ACC AG | Mutant Forward | A | Cas9 | ||
42562 | CTC CAC TGC CAG AAC CTT TC | Mutant Reverse | A | SunTag | ||
oIMR9020 | AAG GGA GCT GCA GTG GAG TA | Wild type Forward | A | Rosa |
Component | Final Concentration |
---|---|
ddH2O | |
Kapa 2G HS buffer | 1.30 X |
MgCl2 | 2.60 mM |
dNTP KAPA | 0.26 mM |
24500 | 0.50 uM |
42561 | 0.50 uM |
42562 | 0.50 uM |
oIMR9020 | 0.50 uM |
Glycerol | 6.50 % |
Dye | 1.00 X |
Kapa 2G HS taq polym | 0.03 U/ul |
DNA |
Step | Temp °C | Time | Note |
---|---|---|---|
1 | 94.0 | -- | |
2 | 94.0 | -- | |
3 | 65.0 | -- | -0.5 C per cycle decrease |
4 | 68.0 | -- | |
5 | -- | repeat steps 2-4 for 10 cycles (Touchdown) | |
6 | 94.0 | -- | |
7 | 60.0 | -- | |
8 | 72.0 | -- | |
9 | -- | repeat steps 6-8 for 28 cycles | |
10 | 72.0 | -- | |
11 | 10.0 | -- | hold |