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Notes
The genotyping protocol(s) presented here have been optimized for reagents and conditions used by The Jackson Laboratory (JAX).
To genotype animals, JAX recommends researchers validate the assay independently upon receipt of animals into their facility.
Reaction cycling temperature and times may require additional optimization based on the specific genotyping reagents used.
Expected Results
Mutant = CCA
Heterozygote = TTG/CCA
Wild type = TTG
>chr15:76540463+76540547 85bp CGCTGTACAGAGCTTTTCCTG AAGGGGGTTGGCACAGCTA
Sequence
GACCAATGGCGTGCTGCCCGCTGTACAGAGCTTTTCCTGCCTGCCCTATGGGCGCCTGGCCTACCAC(ttg/cca)GCTGTCGTACTGGGTAGCTGTGCCAACCCCCTTGCCTGCTTTCTGGCCATGGCAGTGCTGTGCAG
JAX Protocol
Protocol Primers
| Primer | 5' Label | Sequence 5' → 3' | 3' Label | Primer Type | Reaction | Note |
|---|---|---|---|---|---|---|
| 51629 | CGC TGT ACA GAG CTT TTC CTG | Forward | A | |||
| 51630 | AAG GGG GTT GGC ACA GCT A | Reverse | A | |||
| 51631 | Fluorophore-1 | CCT ACC ACT TGG CTG TCG TAC T | Quencher-1 | WT Probe | ||
| 51632 | Fluorophore-2 | CCT ACC ACC CAG CTG TCG T | Quencher-2 | MUT Probe |
Reaction A
| Component | Final Concentration |
|---|---|
| Kapa Probe Fast QPCR | 1.00 X |
| ddH2O | |
| 51629 | 0.40 uM |
| 51630 | 0.40 uM |
| Wt Probe | 0.15 uM |
| Mutant Probe | 0.15 uM |
| DNA |
Cycling
| Step | Temp °C | Time | Note |
|---|---|---|---|
| 1 | 95.0 | -- | |
| 2 | 95.0 | -- | |
| 3 | 60.0 | -- | |
| 4 | -- | repeat steps 2-3 for 40 cycles | |
| 5 | 40.0 | -- | Forever |
JAX uses a very high speed Taq (~1000 bp/sec), use cycling times recommended for your reagents.
Strains Using This Protocol
This is the only strain that uses this protocol.