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Notes
The genotyping protocol(s) presented here have been optimized for reagents and conditions used by The Jackson Laboratory (JAX).
To genotype animals, JAX recommends researchers validate the assay independently upon receipt of animals into their facility.
Reaction cycling temperature and times may require additional optimization based on the specific genotyping reagents used.
Expected Results
Mutant = T/T
Heterozygote = -/T
Wild type = -/-
>chr19:5159969-5160053 85bp TTATGTTGCAAAGGAGGAAGC TCTGCCATGTTGATGAGTCC
Sequence
WT sequence with [insertion]:
CTTAAGCGAGATGCCAACAAACTGCAGATTATGTTGCAAAGGAGGAAGCGGTACAAGAACCGAACT[t]ATCTTGGGCTATAAAACCTTAGCTGTGGGACTCATCAACATGGCAGAGgtgagca
JAX Protocol
Protocol Primers
| Primer | 5' Label | Sequence 5' → 3' | 3' Label | Primer Type | Reaction | Note |
|---|---|---|---|---|---|---|
| 43301 | TTA TGT TGC AAA GGA GGA AGC | Forward | A | |||
| 43302 | TCT GCC ATG TTG ATG AGT CC | Reverse | A | |||
| 43303 | Fluorophore-1 | AGA ACC GAA CTA TCT TGG GCT A | Quencher-1 | WT Probe | ||
| 43304 | Fluorophore-2 | AGA ACC GAA CTT ATC TTG GGC TA | Quencher-2 | MUT Probe |
Reaction A
| Component | Final Concentration |
|---|---|
| Kapa Probe Fast QPCR | 1.00 X |
| ddH2O | |
| 43301 | 0.40 uM |
| 43302 | 0.40 uM |
| Wt Probe | 0.15 uM |
| Mutant Probe | 0.15 uM |
| DNA |
Cycling
| Step | Temp °C | Time | Note |
|---|---|---|---|
| 1 | 95.0 | -- | |
| 2 | 95.0 | -- | |
| 3 | 60.0 | -- | |
| 4 | -- | repeat steps 2-3 for 40 cycles | |
| 5 | 40.0 | -- | Forever |
JAX uses a very high speed Taq (~1000 bp/sec), use cycling times recommended for your reagents.
Strains Using This Protocol
This is the only strain that uses this protocol.