Tools for automatic glomerulus identification and histological quantification from scanned PAS slides
This tool calculates the glomerular filtration rate in mice using the FITC-inulin method
Phenotype and RNAseq data from approx. 200 (B6-Col4a5 KO x DO)F1 mice
A tool for novel Least Diverged Ortholog prediction through machine learning
FusorSV is an open source framework that takes a data mining approach to assess performance and merge callsets from an ensemble of Structural Variant calling algorithms.
Custom genome browser provides detailed answers to questions on the haplotype diversity and phylogenetic origin of the genetic variation underlying any genomic region of most laboratory strains.
These programs are based on marker regression and are designed for detecting covariate effects and interactions from inbred line cross data.
R/qtl is an extensible, interactive environment for mapping quantitative trait loci (QTL) in experimental crosses.
R/maanova is an extensible, interactive environment for Microarray analysis.
International database resource for the laboratory mouse, providing integrated genetic, genomic, and biological data.
MoDIS links to the Pathbase.net website to provide detailed information and annotated images of similar lesions in laboratory mice, making it a unique and useful training aid.
Online tool used to find genes and transcripts in designated regions. Users can either enter a range manually or click and drag to select a region of interest.
MAANOVA is a set of functions written in Matlab for the analysis of variance on microarray data.
J/maanova is an open sourced desktop application developed with the aim of simplifying the analysis of microarray experiments.
The JAX Colony Management System (JCMS) is a free and supported multi-user relational database system for managing research mouse colonies.
J/qtl is a Java graphical user interface (GUI) for the popular QTL data analysis software R/qtl.
Pseudomarker is a set of programs written in MATLAB for the analysis of QTL data from inbred line crosses.
PubArray is a desktop application that allows you to turn the analyzed results of your microarray experiment into a web application which is accessible via your browser.
This software is used to fit Hidden Markov Models in Stochastic models for heterogeneous DNA sequences.
Allows users to integrate gene sets across species, tissue and experimental platform.
This Strain Survey GEM holds data for a gene expression survey of 26 inbred mouse strains. Users can perform simple or advanced queries to find various locations of interest.