The Jackson Laboratory
Adv: Dr. Gary A. Churchill and Matthew A. Hibbs
University of North Carolina at Chapel Hill
Ph.D., Computer Science
Adv: Shawn M. Gomez and Jan F. Prins
Gary Churchill's Lab, The Jackson Laboratory
Associate Research Scientist
Gary Churchill's Lab & Matthew Hibb's Lab, The Jackson Laboratory
g2gtools: A set of tools for creation of custom genomes and genome-to-genome coordinate conversion.
alntools: A set of tools for preprocessing read alignment files (bam, maf, pslx) into a compressed three-dimensional incident matrix for efficient downstream computation and storage.
kallisto-align: A tool for exporting kallisto pseudo-alignment as a compressed three-dimensional incident matrix.
EMASE: Expectation-Maximization algorithm for Allele-Specific Expression.
emase-zero: C++ implementation of EMASE.
GBRS: Genotype-free genome reconstruction using RNA-Seq data from multiparental population models.
scBASE: A Bayesian mixture model for the analysis of allelic expression in single cells
scRATE: Bayesian model selection approach for detecting zero-inflated genes in droplet-based single-cell RNA sequencing data