Protocol 40909: QPCR Assay - Tg(Vav1-Hottip)1Xumsa qPCR Alt 1
Version 2.0

Notes

 

Taqman qPCR protocols are run on a real time PCR instrument. Use an appropriate instrument specific Fluorophore/Quencher combination. The transgene genotype is determined by comparing ΔCt values of each unknown sample against known homozygous and hemizygous controls, using appropriate endogenous references.

 

The genotyping protocol(s) presented here have been optimized for reagents and conditions used by The Jackson Laboratory (JAX). To genotype animals, JAX recommends researchers validate the assay independently upon receipt of animals into their facility. Reaction cycling temperature and times may require additional optimization based on the specific genotyping reagents used.

Expected Results

Tg=   118 bp

IPC = 74 bp

Sequence

ggtgttgtagttgtccccactggggcaggcggcggcggtggtgaaggaacgagggtgcacggggcctccccgaggggccaagtgagaggccggcGCGCCTGAAGGGGTTCAATTCGAA

JAX Protocol

Protocol Primers

Primer 5' Label Sequence 5' → 3' 3' Label Primer Type Reaction Note
24192 GGT GTT GTA GTT GTC CCC ACT Transgene Forward A
56980 TTC GAA TTG AAC CCC TTC AG Transgene Reverse A
57065 Fluorophore-1 TGG TGA AGG AAC GAG GGT G Quencher-1 Tg Probe
oIMR1544 CAC GTG GGC TCC AGC ATT A
oIMR3580 TCA CCA GTC ATT TCT GCC TTT G A
TmoIMR0105 Fluorophore-2 CCA ATG GTC GGG CAC TGC TCA A Quencher-2

Reaction A

Component Final Concentration
ddH2O
Kapa Probe Fast QPCR 1.00 X
24192 0.40 uM
56980 0.40 uM
oIMR1544 0.40 uM
oIMR3580 0.40 uM
Tg Probe 0.15 uM
IC Probe 0.15 uM
DNA

Cycling

Step Temp °C Time Note
1 95.0 --
2 95.0 --
3 60.0 -- repeat steps 2-3 for 40 cycles
JAX uses a very high speed Taq (~1000 bp/sec), use cycling times recommended for your reagents.

Strains Using This Protocol

This is the only strain that uses this protocol.