Taqman qPCR protocols are run on a real time PCR instrument. Use an appropriate instrument specific Fluorophore/Quencher combination.
>chr12:70159070+70159179 110bp TACATGCAGCTGGGTGAAG TGGCCAAGGCTACACAGAGA
Mut= 99 bp
Wt= 110 bp
Fam=Mut
Hex=Wt
Wt Sequence (deletion in lower case):
TGTAGCTTCCTTCCCTGTTCCAGCTTGGCTTCTGCAGGGACCAACATGGGCTCTGTTTGATGGCCTCCTATAGCTGGCTGCCCCTCAGCTCCACTTTACACAGTTACATGCAGCTGGGTGAAGGATTTCCcttacatgccagggttagcctctggaattggatttgaattgttgtttttttttgggacagggcttctctgtgtagccttggccatcctggaacttgctctgtagatcgggcctgcctctgcctcctgagtgctagaattaaaggccgccactaccaccaccgggctggatttgaatcataagagacaaacaatccaagacaaaacttgggctgatcttgaaaagtttattcctcaatattttgcaggcttttcccatgcttctgctcagcgctcgggagtaaaatagctgccgagtacagaaacttcacgagtaaatctttaaaggaacacattttccctccgctgatgaatatgctgatatatttaaattgcagtaagtatatactgtacataaatatccctacataaattctccCCAATAGAGAACTCATTGCTCTTACAGTCACAGCACAAGAAAAACATTTGTTACAAAACCCTGGCTAGACTCACAGGGTCAAAAACTACTGTACTGTATCTAAACTGCTATAAAATGTGTGTATGTGTGTTTGTGT
This mutation is a 416 bp deletion beginning at Chromosome 12 position 70,159,096 bp and ending after 70,159,511 bp (GRCm38/mm10).
Primer | 5' Label | Sequence 5' → 3' | 3' Label | Primer Type | Reaction | Note |
---|---|---|---|---|---|---|
45055 | TAC ATG CAG CTG GGT GAA G | Common | A | |||
45056 | TGG CCA AGG CTA CAC AGA GA | Wild type Reverse | A | |||
45057 | TGA GTC TAG CCA GGG TTT TG | Mutant Reverse | A | |||
45058 | Fluorophore-1 | ACA TGC CAG GGT TAG CCT C | Quencher-1 | WT Probe | ||
45059 | Fluorophore-2 | CCC AAT AGA GAA CTC ATT GCT CTT | Quencher-2 | MUT Probe |
Component | Final Concentration |
---|---|
Kapa Probe Fast QPCR | 1.00 X |
ddH2O | |
45055 | 0.40 uM |
45056 | 0.40 uM |
45057 | 0.40 uM |
Wt Probe | 0.15 uM |
Mutant Probe | 0.15 uM |
DNA |
Step | Temp °C | Time | Note |
---|---|---|---|
1 | 95.0 | -- | |
2 | 95.0 | -- | |
3 | 60.0 | -- | |
4 | -- | repeat steps 2-3 for 40 cycles | |
5 | 40.0 | -- | Forever |