Taqman qPCR protocols are run on a real time PCR instrument. Use an appropriate instrument specific Fluorophore/Quencher combination. The transgene genotype is determined by comparing ΔCt values of each unknown sample against known homozygous and hemizygous controls, using appropriate endogenous references.
>chr1:155651937-155652042 106bp CTTGCAAATTGTAGAAGGCTCA GAGGGGGAAAGGAGAGTCA
Mutant= 108 bp
Wild Type = 106 bp
Wt Sequence: cttgcaaattgtagaaggctcagtgaggccagaataataccagagtcatgagccttTCtcatgaaaccaccaaactatggacagaaatgactctcctttccccctc
Mutant Sequence: cttgcaaattgtagaaggctcagtgaggccagaataataccagagtcatgagccttTCtcccagacctcatagtgtactgctagagctgtcctacaaaagaaacacca
321 bp deletion spanning ENSMUSE00001254521 (exon 12) beginning at Chromosome 1 negative strand position 153,804,855 bp, CTCATGAAACCACCAAACTA, and ending after AAGCCACATTAAGCAAAGAT at 153,804,535 bp (GRCm38/mm10).
Primer | 5' Label | Sequence 5' → 3' | 3' Label | Primer Type | Reaction | Note |
---|---|---|---|---|---|---|
35265 | Fluorophore-1 | CAT GAA ACC ACC AAA CTA TGG AC | Quencher-1 | WT Probe | ||
35266 | Fluorophore-2 | CCC AGA CCT CAT AGT GTA CTG CTA G | Quencher-2 | MUT Probe | ||
35267 | CTT GCA AAT TGT AGA AGG CTC A | Common | A | |||
35268 | GAG GGG GAA AGG AGA GTC A | Wild type Reverse | A | |||
35269 | TGG TGT TTC TTT TGT AGG ACA GC | Mutant Reverse | A |
Component | Final Concentration |
---|---|
Kapa Probe Fast QPCR | 1.00 X |
ddH2O | |
35267 | 0.40 uM |
35268 | 0.40 uM |
35269 | 0.40 uM |
Wt Probe | 0.15 uM |
Mutant Probe | 0.15 uM |
DNA |
Step | Temp °C | Time | Note |
---|---|---|---|
1 | 95.0 | -- | |
2 | 95.0 | -- | |
3 | 60.0 | -- | |
4 | -- | repeat steps 2-3 for 40 cycles | |
5 | 40.0 | -- | Forever |