Protocol 21329: Probe Assay - Zswim6<em1(IMPC)J> Probe
Version 1.0

Notes

Taqman qPCR protocols are run on a real time PCR instrument. Use an appropriate instrument specific Fluorophore/Quencher combination. The transgene genotype is determined by comparing ΔCt values of each unknown sample against known homozygous and hemizygous controls, using appropriate endogenous references.

The genotyping protocol(s) presented here have been optimized for reagents and conditions used by The Jackson Laboratory (JAX). To genotype animals, JAX recommends researchers validate the assay independently upon receipt of animals into their facility. Reaction cycling temperature and times may require additional optimization based on the specific genotyping reagents used.

Expected Results

Mutant=  111 bp

Wild Type = 108 bp

JAX Protocol

Protocol Primers

Primer 5' Label Sequence 5' → 3' 3' Label Primer Type Reaction Note
32221 TCA TGC ATT TCC GAT AAG ACA Mutant Forward A
32222 Fluorophore-1 TTT CTG TGG CTC TTC AAC TCT TT Quencher-1 MUT Probe
32223 ATG GAC CAG TGA GAA ACG TAT G Wild type Forward A
32224 Fluorophore-2 ATT GAC TTT CGG CAG CAT AG Quencher-2 WT Probe
32225 GCA TCA CTT TAT ACT AAC TGA GAG AGG Common A

Reaction A

Component Final Concentration
Kapa Probe Fast QPCR 1.00 X
ddH2O
32221 0.40 uM
32223 0.40 uM
32225 0.40 uM
Wt Probe 0.15 uM
Mutant Probe 0.15 uM
DNA

Cycling

Step Temp °C Time Note
1 95.0 --
2 95.0 --
3 60.0 --
4 -- repeat steps 2-3 for 40 cycles
5 40.0 -- Forever
JAX uses a very high speed Taq (~1000 bp/sec), use cycling times recommended for your reagents.

Strains Using This Protocol

This is the only strain that uses this protocol.