Genotyping Protocols Database
Protocol 35460: Sanger sequencing Assay - Jak2<V617F> SEQ Alt 2
Version 1.0

Notes

 

>chr19:29369236+29369528 293bp AGGACACACGCTGGTTCTCT TCCAAGGTTTTGCTGACACC

 

Mut = T

WT= G

The genotyping protocol(s) presented here have been optimized for reagents and conditions used by The Jackson Laboratory (JAX). To genotype animals, JAX recommends researchers validate the assay independently upon receipt of animals into their facility. Reaction cycling temperature and times may require additional optimization based on the specific genotyping reagents used.

Expected Results

Sequence

aggacacacgctggttctcttaagtcaggggtatctttctgagttctgtacttacagactctttggacagacattccttcacgtttcttgtctccctttgccccctctagTCTTTCTTCgaagcagcaagcatgatgagTCAGCTTTCTCACAAGCATTTGGTTTTGAATTATGGtGTCTGT(g/t)TCTGTGGAGAGGAGAgtaagtaaagccagctgcttgtctttgtcaatgtcatagcctgtctcagaatccttctcatttagggctacaataggtgtcagcaaaaccttgga

JAX Protocol

Protocol Primers

Primer 5' Label Sequence 5' → 3' 3' Label Primer Type Reaction Note
46119 AGG ACA CAC GCT GGT TCT CT Forward A
46120 TCC AAG GTT TTG CTG ACA CC Reverse A

Reaction A

Component Final Concentration
ddH2O
Kapa 2G HS buffer 1.30 X
MgCl2 2.60 mM
dNTPS-kapa 0.26 mM
46119 0.50 uM
46120 0.50 uM
Glycerol 6.50 %
Kapa 2G HS taq polym 0.03 U/ul
DNA

Cycling

Step Temp °C Time Note
1 94.0 --
2 94.0 --
3 65.0 -- -0.5 C per cycle decrease
4 68.0 --
5 -- repeat steps 2-4 for 10 cycles (Touchdown)
6 94.0 --
7 60.0 --
8 72.0 --
9 -- repeat steps 6-8 for 28 cycles
10 72.0 --
11 10.0 -- hold
JAX uses a very high speed Taq (~1000 bp/sec), use cycling times recommended for your reagents.
JAX uses a 'touchdown' cycling protocol and therefore has not calculated the optimal annealing temperature for each set of primers.

Strains Using This Protocol

This is the only strain that uses this protocol.