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Taqman qPCR protocols are run on a real time PCR instrument. Use an appropriate instrument specific Fluorophore/Quencher combination. The transgene genotype is determined by comparing ΔCt values of each unknown sample against known homozygous and hemizygous controls, using appropriate endogenous references.
>chr3:108380912+108381034 123bp TGCCCAGCTATAATTGTGTTTG ACTGCGAGAGAGCAAGAGTG
Mutant= 119 bp
Wild Type = 123 bp
Wt Sequence: tgcccagctataattgtgtttgaaccattgtttctaattgCGtttaatcctagttggtatggaaagtatactggtggcattggtcagtctctgagtcaggcaacactcttgctctctcgcagT
Mutant Sequence: tgcccagctataattgtgtttgaaccattgtttctaattgCTttgtgcaagttcctggtttctatttgccattactctgaatatcacatcaatgtatcccagtgcttcagagcttgttt
Primer | 5' Label | Sequence 5' → 3' | 3' Label | Primer Type | Reaction | Note |
---|---|---|---|---|---|---|
34892 | TGC CCA GCT ATA ATT GTG TTT G | Common | A | |||
34893 | ACT GCG AGA GAG CAA GAG TG | Wild type Reverse | A | |||
34894 | AAA CAA GCT CTG AAG CAC TGG | Mutant Reverse | A | |||
34895 | Fluorophore-1 | TGG TGG CAT TGG TCA GTC T | Quencher-1 | WT Probe | ||
34896 | Fluorophore-2 | TTG CCA TTA CTC TGA ATA TCA CAT C | Quencher-2 | MUT Probe |
Component | Final Concentration |
---|---|
Kapa Probe Fast QPCR | 1.00 X |
ddH2O | |
34892 | 0.40 uM |
34893 | 0.40 uM |
34894 | 0.40 uM |
Wt Probe | 0.15 uM |
Mutant Probe | 0.15 uM |
DNA |
Step | Temp °C | Time | Note |
---|---|---|---|
1 | 95.0 | -- | |
2 | 95.0 | -- | |
3 | 60.0 | -- | |
4 | -- | repeat steps 2-3 for 40 cycles | |
5 | 40.0 | -- | Forever |