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Mutant = 226 bp
Heterozygote = 128 bp and 226 bp
Wild type = 128 bp
>chr6:113025995-113026122 128bp GAGTTCTCTGCTGCCTCCTG TAAGCCTGCCCAGAAGACTC
JR 028764 & 030170 - Mutant = ~150 bp
This cannot defferentiate between 28764 & 30170. Must be run alongside Gt(ROSA)26Sor<(CAG-Neo)> for those strains
Primer | 5' Label | Sequence 5' → 3' | 3' Label | Primer Type | Reaction | Note |
---|---|---|---|---|---|---|
34319 | CCA CAT AGC GTA AAA GGA GCA | Mutant Reverse | B | |||
34962 | TGG GGA TGG TCA GGT AAA CT | Mutant Forward | B | |||
oIMR4981 | GAG TTC TCT GCT GCC TCC TG | Wild type Forward | A | |||
oIMR8038 | TAA GCC TGC CCA GAA GAC TC | Wild type Reverse | A |
Component | Final Concentration |
---|---|
ddH2O | |
Kapa 2G HS buffer | 1.30 X |
MgCl2 | 2.60 mM |
dNTPS-kapa | 0.26 mM |
oIMR4981 | 0.50 uM |
oIMR8038 | 0.50 uM |
Glycerol | 6.50 % |
Dye | 1.00 X |
Kapa 2G HS taq polym | 0.03 U/ul |
DNA |
Step | Temp °C | Time | Note |
---|---|---|---|
1 | 94.0 | -- | |
2 | 94.0 | -- | |
3 | 65.0 | -- | -0.5 C per cycle decrease |
4 | 68.0 | -- | |
5 | -- | repeat steps 2-4 for 10 cycles (Touchdown) | |
6 | 94.0 | -- | |
7 | 60.0 | -- | |
8 | 72.0 | -- | |
9 | -- | repeat steps 6-8 for 28 cycles | |
10 | 72.0 | -- | |
11 | 10.0 | -- | hold |
Component | Final Concentration |
---|---|
ddH2O | |
Kapa 2G HS buffer | 1.30 X |
MgCl2 | 2.60 mM |
dNTPS-kapa | 0.26 mM |
34319 | 0.50 uM |
34962 | 0.50 uM |
Glycerol | 6.50 % |
Dye | 1.00 X |
Kapa 2G HS taq polym | 0.03 U/ul |
DNA |
Step | Temp °C | Time | Note |
---|---|---|---|
1 | 94.0 | -- | |
2 | 94.0 | -- | |
3 | 65.0 | -- | -0.5 C per cycle decrease |
4 | 68.0 | -- | |
5 | -- | repeat steps 2-4 for 10 cycles (Touchdown) | |
6 | 94.0 | -- | |
7 | 60.0 | -- | |
8 | 72.0 | -- | |
9 | -- | repeat steps 6-8 for 28 cycles | |
10 | 72.0 | -- | |
11 | 10.0 | -- | hold |