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This assay will NOT distinguish hemizygous from homozygous transgenic animals.
Transgene = 230 bp
Internal positive control = 324 bp
Primer | 5' Label | Sequence 5' → 3' | 3' Label | Primer Type | Reaction | Note |
---|---|---|---|---|---|---|
15300 | GTT CAT GTA CGG CTC CAA GG | Transgene Forward | A | |||
15301 | TGG TCT TCT TCT GCA TTA CGG | Transgene Reverse | A | |||
oIMR7338 | CTA GGC CAC AGA ATT GAA AGA TCT | Internal Positive Control Forward | A | |||
oIMR7339 | GTA GGT GGA AAT TCT AGC ATC ATC C | Internal Positive Control Reverse | A |
Component | Final Concentration |
---|---|
ddH2O | |
Kapa 2G HS buffer | 1.30 X |
MgCl2 | 2.60 mM |
dNTP KAPA | 0.26 mM |
15300 | 0.50 uM |
15301 | 0.50 uM |
oIMR7338 | 0.50 uM |
oIMR7339 | 0.50 uM |
Glycerol | 6.50 % |
Dye | 1.00 X |
Kapa 2G HS taq polym | 0.03 U/ul |
DNA |
Step | Temp °C | Time | Note |
---|---|---|---|
1 | 94.0 | -- | |
2 | 94.0 | -- | |
3 | 65.0 | -- | -0.5 C per cycle decrease |
4 | 68.0 | -- | |
5 | -- | repeat steps 2-4 for 10 cycles (Touchdown) | |
6 | 94.0 | -- | |
7 | 60.0 | -- | |
8 | 72.0 | -- | |
9 | -- | repeat steps 6-8 for 28 cycles | |
10 | 72.0 | -- | |
11 | 10.0 | -- | hold |
Stock Number | Strain Name |
---|---|
030219 | B6.Cg-Igs7tm139.1(tetO-EGFP,CAG-tdTomato,-tTA2)Hze/J |
036087 | B6;129-Gt(ROSA)26Sortm3Cos/J |
018936 | B6;C-Tg(Erv4-tdTomato)449Slp/J |
036272 | B6;CBA-Gt(ROSA)26Sorem1(CAG-Ikzf2,-tdTomato)Zyliu/J |
027395 | C57BL/6-Tg(Pvalb-tdTomato)15Gfng/J |
038819 | STOCK Gt(ROSA)26Sorem3(CAG-Insm1,-tdTomato)Zyliu/J |
030292 | STOCK Ntrk3tm2.1Ddg/J |
026690 | STOCK Tg(Ucp1-luc2,-tdTomato)1Kajim/J |
8 strains use this protocol |