Taqman qPCR protocols are run on a real time PCR instrument. Use an appropriate instrument specific Fluorophore/Quencher combination. The transgene genotype is determined by comparing ΔCt values of each unknown sample against known homozygous and hemizygous controls, using appropriate endogenous references.
Mutant= 79 bp
Wild Type = 113 bp
>chr11:3145193-3145305 113bp CTTGAAGCTGAGGAGGCAGT GGAGGAGGACAAACTGGTCA
Wt Sequence:tattggcagtttgacacatcctgcccttaccttactaccactgttggctcagcagacacccaggataagtgcactagtgttcctttcctgaccagtgggactgctttttccagattcctcttgaagctgaggaggcagtgagagcatgatgGCatctaatgagcttggaagtaccagactgccctgatccacagccaggttttgctgaaaagtgaccagtttgtcctcctccagtagagtgggcagctgaaggattataatctactgtcaagacttggaggcccctgcagtcaaagtccaatagaatattatgaaatggagaatggcttattttaatctctatagtggaattaaaatagca
Mutant Sequence: cctgggcaacgtgctggttattgtgctgtctcatcattttggcaaagaattgatttgataccgcgggcccGGGATCCGATATCCGCCACCATGGTGAGCAAGGGCGAGGAGCTGTTCACCGGGGTGGTGCCCATCCTGGTCGAGCTGGACGGCGACGTAAACGGCCACAAGTTCAGCGTGTCCGGCGAGGGCGAGGGCGATGCCACCTACGGCAAGCTGACCCTGAAGTTCATCTGCACCACCGGCAAGCTGCCCGTGCCCTGGCCCACCCTCGTGACCACCCTGACCTACGGCGTGCAGTGCTTCAGCCGCTACCCCGACCACATGAAGCAGCACGACTTCTTCAAGTCCGCCATGCCCGAAggttggtatcaaagatctccgaagttcctattctctagaaagtataggaacttcataacttcgtatagtacacattatac
Primer | 5' Label | Sequence 5' → 3' | 3' Label | Primer Type | Reaction | Note |
---|---|---|---|---|---|---|
36724 | CTT GAA GCT GAG GAG GCA GT | Wild type Forward | A | |||
36725 | GGA GGA GGA CAA ACT GGT CA | Wild type Reverse | A | |||
36726 | Fluorophore-1 | AGC ATG ATG GCA TCT AAT GAG CTT | Quencher-1 | WT Probe | ||
36731 | GAA CTT CGG AGA TCT TTG ATA CC | Mutant Reverse | A | |||
36738 | CTA CCC CGA CCA CAT GAA G | Mutant Forward | A | |||
36739 | Fluorophore-2 | AGC ACG ACT TCT TCA AGT CCG C | Quencher-2 | MUT Probe |
Component | Final Concentration |
---|---|
Kapa Probe Fast QPCR | 1.00 X |
ddH2O | |
36724 | 0.40 uM |
36725 | 0.40 uM |
36731 | 0.40 uM |
36738 | 0.40 uM |
Wt Probe | 0.15 uM |
Mutant Probe | 0.15 uM |
DNA |
Step | Temp °C | Time | Note |
---|---|---|---|
1 | 95.0 | -- | |
2 | 95.0 | -- | |
3 | 60.0 | -- | |
4 | -- | repeat steps 2-3 for 40 cycles | |
5 | 40.0 | -- | Forever |