Taqman qPCR protocols are run on a real time PCR instrument. Use an appropriate instrument specific Fluorophore/Quencher combination. The transgene genotype is determined by comparing ΔCt values of each unknown sample against known homozygous and hemizygous controls, using appropriate endogenous references.
Mutant= 95 bp
Wild Type = 113 bp
>chr5:109110273+109110385 113bp CATCCTGTGGGCTGAACA AGAGGGCTGAGGCTGTTG
Wt Sequence:tccaaatttctacctcttcatctcctcccatcctgtgggctgaacagtataacagactcccaGTATACaaatggtgggagctagatattagggtaggaagccagatgctaggtatgagagagccaacagcctcagccctctgcttggcttatagATGGAGAACAACTCtggGCAGAGGTCTCAAAG
Mutant Sequence: catctcctcccaTCCTGTGGGCTGAACAGTATAACAGACTCCCAGTAgggctgcaggaattcgatatcaagcttatcgataccgtcgagggacctaATAACTTCGTATAGCATACATTATACGAAGTTatattaagggttattgaatatgatcggaattcctcgagcggccTACAAATGGTGGGAGCTAGATATTAGGGTAGGAAGCCAGATGCTAGGTATGAGAGAGCCAACAGCCTCAGCCCTCTGCTTGGCTTATAGATGGAGAACAACTCTAGGCAGAGGTCTCAAAGGCTGGGGCTGTGTTGGACAG
Primer | 5' Label | Sequence 5' → 3' | 3' Label | Primer Type | Reaction | Note |
---|---|---|---|---|---|---|
35127 | CAT CCT GTG GGC TGA ACA | Common | A | |||
35128 | AGA GGG CTG AGG CTG TTG | Wild type Reverse | A | |||
35129 | Fluorophore-1 | CCC AGT AGG GCT GCA GGA A | Quencher-1 | MUT Probe | ||
35130 | Fluorophore-2 | ACT CCC AGT ATA CAA ATG GTG GGA | Quencher-2 | WT Probe | ||
oIMR7882 | CGA AGT TAT TAG GTC CCT CGA C | Mutant Reverse | A |
Component | Final Concentration |
---|---|
Kapa Probe Fast QPCR | 1.00 X |
ddH2O | |
35127 | 0.40 uM |
35128 | 0.40 uM |
oIMR7882 | 0.40 uM |
Wt Probe | 0.15 uM |
Mutant Probe | 0.15 uM |
DNA |
Step | Temp °C | Time | Note |
---|---|---|---|
1 | 95.0 | -- | |
2 | 95.0 | -- | |
3 | 60.0 | -- | |
4 | -- | repeat steps 2-3 for 40 cycles | |
5 | 40.0 | -- | Forever |