Stock No: 013144
Protocol 31940: QPCR Assay - Generic LacZ QPCR Alternate 1
Version 8.0
Notes
Taqman qPCR protocols are run on a real time PCR instrument. Use an appropriate
instrument specific Fluorophore/Quencher combination. The transgene genotype is
determined by comparing ΔCt values of each unknown sample against known
homozygous and hemizygous controls, using appropriate endogenous references.
instrument specific Fluorophore/Quencher combination. The transgene genotype is
determined by comparing ΔCt values of each unknown sample against known
homozygous and hemizygous controls, using appropriate endogenous references.
The genotyping protocol(s) presented here have been optimized for reagents and conditions used by The Jackson Laboratory (JAX).
To genotype animals, JAX recommends researchers validate the assay independently upon receipt of animals into their facility.
Reaction cycling temperature and times may require additional optimization based on the specific genotyping reagents used.
Expected Results
JAX Protocol
Protocol Primers
| Primer | 5' Label | Sequence 5' → 3' | 3' Label | Primer Type | Reaction | Note |
|---|---|---|---|---|---|---|
| 37301 | GTT TAT GCA GCA ACG AGA CG | Transgene Reverse | A | |||
| 37302 | Fluorophore-1 | CAG GAT ATG TGG CGG ATG AGC | Quencher-1 | Tg Probe | ||
| mom0095 | TGA CGG CAG TTA TCT GGA AG | Transgene Forward | A | |||
| oIMR1544 | CAC GTG GGC TCC AGC ATT | Internal Positive Control Forward | A | |||
| oIMR3580 | TCA CCA GTC ATT TCT GCC TTT G | Internal Positive Control Reverse | A | |||
| TmoIMR0105 | Fluorophore-2 | CCA ATG GTC GGG CAC TGC TCA A | Quencher-2 | IC Probe |
Reaction A
| Component | Final Concentration |
|---|---|
| Kapa Probe Fast QPCR | 1.00 X |
| ddH2O | |
| 37301 | 0.40 uM |
| mom0095 | 0.40 uM |
| oIMR1544 | 0.40 uM |
| oIMR3580 | 0.40 uM |
| Tg Probe | 0.15 uM |
| IC Probe | 0.15 uM |
| DNA |
Cycling
| Step | Temp °C | Time | Note |
|---|---|---|---|
| 1 | 95.0 | -- | |
| 2 | 95.0 | -- | |
| 3 | 60.0 | -- | repeat steps 2-3 for 40 cycles |
JAX uses a very high speed Taq (~1000 bp/sec), use cycling times recommended for your reagents.
Strains Using This Protocol
| Stock Number | Strain Name |
|---|---|
| 028635 | B6.129(Cg)-Cntnap2tm2Pele/J |
| 013144 | B6.129P2-Aim2Gt(CSG445)Byg/J |
| 034597 | B6.129P2-Kif13aGt(AF0553)Wtsi/AhcJ |
| 025101 | B6.Cg-Avpr1atm1Dgen Tg(AVPR1A)1Bux/BuxJ |
| 005317 | B6.Cg-Tg(BAT-lacZ)3Picc/J |
| 002982 | B6.Cg-Tg(CAG-lacZ)32And/J |
| 033345 | B6.Cg-Tg(Cdh5-COP4*L132C,-lacZ)B28-2Mik/J |
| 032889 | B6.Cg-Tg(Cdh5-RHO/Adrb2,-lacZ)B27-3Mik/J |
| 024050 | B6.Cg-Tg(Hmgcr-lacZ)H253Sest/J |
| 007972 | B6;CBA-Tg(Olfr151-taulacZ)4Mom/MomJ |
| 007973 | B6;CBA-Tg(Olfr16-taulacZ)1Mom/MomJ |
| 007974 | B6;CBA-Tg(Olfr160-taulacZ)V4-7Mom/MomJ |
| 007976 | B6;CBA-Tg(Olfr713-taulacZ)4Mom/MomJ |
| 007975 | B6;CBA-Tg(OR8A1-taulacZ)1Mom/MomJ |
| 008344 | B6;DBA-Tg(Fos-tTA,Fos-EGFP*)1Mmay Tg(tetO-lacZ,tTA*)1Mmay/J |
| 026216 | B6;SJL-Tg(Tnnt2-lacZ)497Jl/J |
| 034731 | B6N(129S4)-Srd5a3tm1c(EUCOMM)Wtsi/J |
| 007922 | STOCK Gli2tm2.1Alj/J |
| 005707 | STOCK Rag1tm1Mom Tg(TIE2-lacZ)182Sato/J |
| 027315 | STOCK Vegfatm2.1Nagy/J |
| 004623 | STOCK Tg(TCF/Lef1-lacZ)34Efu/J |
| 005728 | STOCK Tg(tetO-Ipf1,lacZ)958.1Macd/J |
| 22 strains use this protocol | |