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Taqman qPCR protocols are run on a real time PCR instrument. Use an appropriate instrument specific Fluorophore/Quencher combination.
Mutant= 94 bp
Wild Type = 79 bp
>chr3:140017207+140017281 75bp TCACAAACCTAAACTAGTAGCCACA CAATACTTCCATTTTGTCATC This assay is capable of distinguishing hemi from hom. Transgene insertion site is known to be on mouse Chr 3.
Wt Sequence: agtgaactattagtgtggtttgttcctgacatgcattctttctatcacaaacctaaactagtagccacagtgttggggtttTTgagatttttctgagTgatgacaaaatggaagtattgAagaaaaaagtctgatttttactactgagtctcaaaattctaaaattagggtcaaaatcctaattttaaatgagaagaaatggtttgtgttccaagaactctatccaaaatgattaagtgacctagaaaag
Mutant Sequence:TGAACCATCACACTGGCTAGTGAACTATTAGTGTGGTTTGTTCCTGACATGCATTCTTTCTATCACAAACCTAAACTAGTAGCCACAGTGTTGGGGTTTTcgacggatccaaaggcagcaaaaaggcagAgagggtgatactgggcctggcttaagcatttgaaacttcaaagctcacccccaattacacacttcttccaacaagtccacacctcctaattagtgccactctctgtgggcctacggagagtattttcattctaactaccaca
Primer | 5' Label | Sequence 5' → 3' | 3' Label | Primer Type | Reaction | Note |
---|---|---|---|---|---|---|
43113 | TCA CAA ACC TAA ACT AGT AGC CAC A | Common | A | |||
43114 | CTT AAG CCA GGC CCA GTA TC | Mutant Reverse | A | |||
43115 | TCT TCA ATA CTT CCA TTT TGT CAT C | Wild type Reverse | A | |||
43116 | Fluorophore-1 | CAA AGG CAG CAA AAA GGC AG | Quencher-1 | MUT Probe | ||
43117 | Fluorophore-2 | TGG GGT TTT TGA GAT TTT TCT GAG | Quencher-2 | WT Probe |
Component | Final Concentration |
---|---|
Kapa Probe Fast QPCR | 1.00 X |
ddH2O | |
43113 | 0.40 uM |
43114 | 0.40 uM |
43115 | 0.40 uM |
Wt Probe | 0.15 uM |
Mutant Probe | 0.15 uM |
DNA |
Step | Temp °C | Time | Note |
---|---|---|---|
1 | 95.0 | -- | |
2 | 95.0 | -- | |
3 | 60.0 | -- | |
4 | -- | repeat steps 2-3 for 40 cycles | |
5 | 40.0 | -- | Forever |