Stock No: 005304
Protocol 36835: Sanger sequencing Assay - Gabra2<C57BL/6J>-SEQ
Version 1.0

Notes

Mut = -/-

WT= T/T   

Assay detect a deletion at Chr5:71014638 (GRCm38/mm10)

>chr5:71014434-71014803 370bp AGAGGCAACCTTTCTTGATAACT GTTCCATCATCCTGGATTCG

The genotyping protocol(s) presented here have been optimized for reagents and conditions used by The Jackson Laboratory (JAX). To genotype animals, JAX recommends researchers validate the assay independently upon receipt of animals into their facility. Reaction cycling temperature and times may require additional optimization based on the specific genotyping reagents used.

Expected Results

Sequence

 
ttctgtaaactatttggaatactctgtctcctgaaatttataggcttactacttctaaaacatgtactgtTTTCAAAGGAATTGTAAATTTATATTT(t/-)AGGAGTATACAATAGATGTTTTCTTTCGGCAAAAATGGAAAGATGAGCGTTTAAAATTTAAAGGTCCTATGAATATCCTTCGACTTAACAATTTAATGGCCAGCAAAATCTGGAC

JAX Protocol

Protocol Primers

Primer 5' Label Sequence 5' → 3' 3' Label Primer Type Reaction Note
49841 AGA GGC AAC CTT TCT TGA TAA CT Forward A
49842 GTT CCA TCA TCC TGG ATT CG Reverse A

Reaction A

Component Final Concentration
ddH2O
Kapa 2G HS buffer 1.30 X
MgCl2 2.60 mM
dNTPS-kapa 0.26 mM
49841 0.50 uM
49842 0.50 uM
Glycerol 6.50 %
Kapa 2G HS taq polym 0.03 U/ul
DNA

Cycling

Step Temp °C Time Note
1 94.0 --
2 94.0 --
3 65.0 -- -0.5 C per cycle decrease
4 68.0 --
5 -- repeat steps 2-4 for 10 cycles (Touchdown)
6 94.0 --
7 60.0 --
8 72.0 --
9 -- repeat steps 6-8 for 28 cycles
10 72.0 --
11 10.0 -- hold
JAX uses a very high speed Taq (~1000 bp/sec), use cycling times recommended for your reagents.
JAX uses a 'touchdown' cycling protocol and therefore has not calculated the optimal annealing temperature for each set of primers.

Strains Using This Protocol

Stock Number Strain Name
000664 C57BL/6J
005304 C57BL/6NJ
2 strains use this protocol