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Taqman qPCR protocols are run on a real time PCR instrument. Use an appropriate instrument specific Fluorophore/Quencher combination. The transgene genotype is determined by comparing ΔCt values of each unknown sample against known homozygous and hemizygous controls, using appropriate endogenous references.
Mutant= 100 bp
Wild Type = 96 bp
Wt Sequence:gtcaagggaccctgagatgtttctgtctttacatagacatctcccgtggagctaccggcccacactaagtggctgctccccagactgcttgagcagccttgttccttttgagtagcaGATCTatcagggagtcccggatctcgagaataatctcagccccacttcctgctcttctgtgggacgtgttgggggacgaatgtgtgtgctatagtctggcttctgtcataatgggcac
Mutant Sequence: tcgacggtatcgataagcttgatatcgaattcctgcagcccggggGATCTATCAGGGAGTCCCGGATCTCGAGAATAATCTCAGCCCCACTTCCTGCTCTTCTGTGGGACG
Primer | 5' Label | Sequence 5' → 3' | 3' Label | Primer Type | Reaction | Note |
---|---|---|---|---|---|---|
32330 | GAT AAG CTT GAT ATC GAA TTC CTG | Mutant Forward | A | |||
32331 | CGT CCC ACA GAA GAG CAG | Common | A | |||
32332 | CTT GAG CAG CCT TGT TCC T | Wild type Forward | A | |||
32333 | Fluorophore-1 | CTT TTG AGT AGC AGA TCT ATC AGG GAG | Quencher-1 | WT Probe | ||
32334 | Fluorophore-2 | AGC CCG GGG GAT CTA TCA | Quencher-2 | MUT Probe |
Component | Final Concentration |
---|---|
Kapa Probe Fast QPCR | 1.00 X |
ddH2O | |
32330 | 0.40 uM |
32331 | 0.40 uM |
32332 | 0.40 uM |
Wt Probe | 0.15 uM |
Mutant Probe | 0.15 uM |
DNA |
Step | Temp °C | Time | Note |
---|---|---|---|
1 | 95.0 | -- | |
2 | 95.0 | -- | |
3 | 60.0 | -- | |
4 | -- | repeat steps 2-3 for 40 cycles | |
5 | 40.0 | -- | Forever |