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Stock No: 003833
Protocol 33934: End Point Analysis Assay - Ighmbp2<nmd-2J>-EP-alternate1
Version 1.0
Notes
The genotyping protocol(s) presented here have been optimized for reagents and conditions used by The Jackson Laboratory (JAX).
To genotype animals, JAX recommends researchers validate the assay independently upon receipt of animals into their facility.
Reaction cycling temperature and times may require additional optimization based on the specific genotyping reagents used.
Expected Results
Mutant = G/G
Heterozygote = A/G
Wild type = A/A
Sequence
AGCTAAAGAGGTGCTGGGTGCTTAGGTGATGGTGTCCCTGAACTCGTGCCCCAAAGAGCTCCTGATTTTGGCTCTGGTCCTCACAGAGCACTGATGACACTGAAGAAGTACCACTCTGGGCCAGCATCCTCCCTCATAGACATCCTGTTGGGCAGCTCCACCCCAAGTCCTGCCATGGAAATACGTGAGGATTTTTAATTTTCTCA(a/g)GTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAGAGAGATGGAGGGGGAGGGAGGGAGAGAGAGAGATGGAGGGGGAGGGAGGGAGAGAGAGAGAGAGAATGAATATGTATCCACATGAGT
JAX Protocol
Protocol Primers
| Primer | 5' Label | Sequence 5' → 3' | 3' Label | Primer Type | Reaction | Note |
|---|---|---|---|---|---|---|
| 41462 | GCC ATG GAA ATA CGT GAG GA | Forward | A | |||
| 41464 | Fluorophore-1 | TTT TAA TTT TCT CAA GTA TGT GTG TGT GT | Quencher-1 | WT Probe | ||
| 41465 | Fluorophore-2 | TTT AAT TTT CTC AGG TAT GTG TGT GTG | Quencher-2 | MUT Probe | ||
| 42509 | CCT CCC TCC CCC TCC ATC T | Reverse | A |
Reaction A
| Component | Final Concentration |
|---|---|
| Kapa Probe Fast QPCR | 1.00 X |
| ddH2O | |
| 41462 | 0.40 uM |
| 42509 | 0.40 uM |
| Wt Probe | 0.15 uM |
| Mutant Probe | 0.15 uM |
| DNA |
Cycling
| Step | Temp °C | Time | Note |
|---|---|---|---|
| 1 | 95.0 | -- | |
| 2 | 95.0 | -- | |
| 3 | 60.0 | -- | |
| 4 | -- | repeat steps 2-3 for 40 cycles | |
| 5 | 40.0 | -- | Forever |
JAX uses a very high speed Taq (~1000 bp/sec), use cycling times recommended for your reagents.
Strains Using This Protocol
This is the only strain that uses this protocol.