Genotyping Protocols Database
Protocol 29915: Standard PCR Assay - Gt(ROSA)26Sor<tm1sor> STD
Version 4.2

Notes

The genotyping protocol(s) presented here have been optimized for reagents and conditions used by The Jackson Laboratory (JAX). To genotype animals, JAX recommends researchers validate the assay independently upon receipt of animals into their facility. Reaction cycling temperature and times may require additional optimization based on the specific genotyping reagents used.

Expected Results

Mutant = 340 bp
Heterozygote = 340 bp and ~650 bp
Wild type = ~650 bp

Separated by gel electrophoresis on a 1.5% agarose gel.

JAX Protocol

Protocol Primers

Primer 5' Label Sequence 5' → 3' 3' Label Primer Type Reaction Note
oIMR8052 GCG AAG AGT TTG TCC TCA ACC Mutant Reverse A SA site
oIMR8545 AAA GTC GCT CTG AGT TGT TAT Common A ROSA26
oIMR8546 GGA GCG GGA GAA ATG GAT ATG Reverse A ROSA26

Reaction A

Component Final Concentration
ddH2O
Kapa 2G HS buffer 1.30 X
MgCl2 2.60 mM
dNTP KAPA 0.26 mM
oIMR8052 0.50 uM
oIMR8545 0.50 uM
oIMR8546 0.50 uM
Glycerol 6.50 %
Dye 1.00 X
Kapa 2G HS taq polym 0.03 U/ul
DNA

Cycling

Step Temp °C Time Note
1 94.0 --
2 94.0 --
3 65.0 -- -0.5 C per cycle decrease
4 68.0 --
5 -- repeat steps 2-4 for 10 cycles (Touchdown)
6 94.0 --
7 60.0 --
8 72.0 --
9 -- repeat steps 6-8 for 28 cycles
10 72.0 --
11 10.0 -- hold
JAX uses a very high speed Taq (~1000 bp/sec), use cycling times recommended for your reagents.
JAX uses a 'touchdown' cycling protocol and therefore has not calculated the optimal annealing temperature for each set of primers.

Strains Using This Protocol

Stock Number Strain Name
002292 129-Gt(ROSA)26Sor/J
003310 129S-Gt(ROSA)26Sortm1Sor/J
007844 129S4/SvJae-Gt(ROSA)26Sortm2(FLP*)Sor/J
007689 129S4/SvJaeSor-Gt(ROSA)26Sortm4(attB/attP)Sor/J
009575 B6(129S4)-Et(cre/ERT2)119Rdav/J
009580 B6(129S4)-Et(cre/ERT2)1382Rdav/J
009581 B6(129S4)-Et(cre/ERT2)1642Rdav/J
009582 B6(129S4)-Et(cre/ERT2)1645Rdav/J
009583 B6(129S4)-Et(cre/ERT2)1957Rdav/J
009584 B6(129S4)-Et(cre/ERT2)2007Rdav/J
009585 B6(129S4)-Et(cre/ERT2)2047Rdav/J
009577 B6(129S4)-Et(cre/ERT2)296Rdav/J
009578 B6(129S4)-Et(cre/ERT2)398Rdav/J
009573 B6(129S4)-Et(cre/ERT2)4Rdav/J
009579 B6(129S4)-Et(cre/ERT2)837Rdav/J
009587 B6(129S4)-Et(icre)1402Rdav/J
009588 B6(129S4)-Et(icre)1470Rdav/J
009589 B6(129S4)-Et(icre)1555Rdav/J
009586 B6(129S4)-Et(icre)754Rdav/J
010696 B6(129S4)-Et(icre/ERT2)10596Rdav/J
010697 B6(129S4)-Et(icre/ERT2)10727Rdav/J
012687 B6(129S4)-Tg(SYN1-icre/mRFP1)9934Rdav/J
010708 B6(Cg)-Ssttm1(cre/ERT2)Zjh/J
008709 B6.129P2(129S4)-Hprttm9(Ple178-EGFP/cre)Ems/Mmjax
011008 B6.129P2(Cg)-Gt(ROSA)26Sortm1(tTA)Roos/J
008706 B6.129P2(Cg)-Hprttm4(Ple88-EGFP)Ems/Mmjax
012580 B6.129P2(Cg)-Hprttm59(Ple123-lacZ)Ems/Mmjax
012581 B6.129P2(Cg)-Hprttm62(Ple153-lacZ)Ems/Mmjax
012583 B6.129P2(Cg)-Hprttm68(Ple127-lacZ)Ems/Mmjax
013586 B6.129P2-Gt(ROSA)26Sortm1Nik/J
003474 B6.129S4-Gt(ROSA)26Sortm1Sor/J
012930 B6.129S4-Gt(ROSA)26Sortm2(FLP*)Sor/J
007743 B6.129S4-Gt(ROSA)26Sortm3(phiC31*)Sor/J
002192 B6.129S7-Gt(ROSA)26Sor/J
014602 B6.Cg-Gt(ROSA)26Sortm1(rtTA*M2)Jae Col1a1tm1(tetO-mCherry)Eggn/J
006965 B6.Cg-Gt(ROSA)26Sortm1(rtTA*M2)Jae/J
006911 B6;129-Gt(ROSA)26Sortm1(rtTA*M2)Jae Col1a1tm2(tetO-Pou5f1)Jae/J
008883 B6;129-Gt(ROSA)26Sortm1(SNCA*A53T)Djmo/TmdJ
003504 B6;129-Gt(ROSA)26Sortm1Sho/J
008889 B6;129-Gt(ROSA)26Sortm2(SNCA*119)Djmo/TmdJ
022732 B6;129-Palb2tm1.1Dli/J
002073 B6;129S-Gt(ROSA)26Sor/J
029415 B6;129S4-Gt(ROSA)26Sortm1(rtTA*M2)Jae Col1a1tm1(tetO-cas9)Sho/J
016836 B6;129S4-Gt(ROSA)26Sortm1(rtTA*M2)Jae Col1a1tm7(tetO-HIST1H2BJ/GFP)Jae/J
003309 B6;129S4-Gt(ROSA)26Sortm1Sor/J
009576 B6;129S4-Et(cre/ERT2)278Rdav/J
019013 B6N.129S6(Cg)-Gt(ROSA)26Sortm2(EGFP/cre)Alj/J
002955 C.129S7-Gt(ROSA)26Sor/J
005420 C;129S7 Gt(ROSA)26Sor-Bmp5cfe-se7J/GrsrJ
007900 C57BL/6-Gt(ROSA)26Sortm1(HBEGF)Awai/J
009427 FVB.129S4(B6)-Gt(ROSA)26Sortm1Sor/J
006331 STOCK Gt(ROSA)26Sortm1(DTA)Jpmb/J
011004 STOCK Gt(ROSA)26Sortm1(rtTA*M2)Jae Col1a1tm3(tetO-Pou5f1,-Sox2,-Klf4,-Myc)Jae/J
011011 STOCK Gt(ROSA)26Sortm1(rtTA*M2)Jae Col1a1tm4(tetO-Pou5f1,-Sox2,-Klf4,-Myc)Jae/J
011013 STOCK Gt(ROSA)26Sortm1(rtTA*M2)Jae Col1a1tm5(tetO-Pou5f1,-Klf4,-Myc)Jae/J
018903 STOCK Gt(ROSA)26Sortm2(EGFP/cre)Alj/J
008876 STOCK Hprttm11(Ple176-EGFP/cre)Ems/Mmjax
012584 STOCK Hprttm69(Ple134-lacZ)Ems/Mmjax
029855 STOCK Sncatm1.1Vlb Gt(ROSA)26Sortm1Sho/J
028560 STOCK Sncatm1.2Vlb Gt(ROSA)26Sortm1Sho/J
60 strains use this protocol