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>chr19:27237959+27238419 461bp TGGTGATGAGAGGCTTGTATGTTGTC TTGACCTCATCGCTGCCGTCCTTG
Mutant = ~200 bp
Heterozygote = 461 bp and ~200 bp
Wild type = 461 bp
Primer | 5' Label | Sequence 5' → 3' | 3' Label | Primer Type | Reaction | Note |
---|---|---|---|---|---|---|
oIMR0504 | TGG TGA TGA GAG GCT TGT ATG TTG TC | Wild type | A | |||
oIMR0505 | TTG ACC TCA TCG CTG CCG TCC TTG | Wild type | A | |||
oIMR0506 | CGG CGA GGA TCT CGT CGT GAC CCA | Mutant | A | Neo | ||
oIMR0507 | GCG ATA CCG TAA AGC ACG AGG AAG | Mutant | A | Neo |
Component | Final Concentration |
---|---|
ddH2O | |
Kapa 2G HS buffer | 1.30 X |
MgCl2 | 2.60 mM |
dNTP KAPA | 0.26 mM |
oIMR0504 | 0.50 uM |
oIMR0505 | 0.50 uM |
oIMR0506 | 0.50 uM |
oIMR0507 | 0.50 uM |
Glycerol | 6.50 % |
Dye | 1.00 X |
Kapa 2G HS taq polym | 0.03 U/ul |
DNA |
Step | Temp °C | Time | Note |
---|---|---|---|
1 | 94.0 | -- | |
2 | 94.0 | -- | |
3 | 65.0 | -- | -0.5 C per cycle decrease |
4 | 68.0 | -- | |
5 | -- | repeat steps 2-4 for 10 cycles (Touchdown) | |
6 | 94.0 | -- | |
7 | 60.0 | -- | |
8 | 72.0 | -- | |
9 | -- | repeat steps 6-8 for 28 cycles | |
10 | 72.0 | -- | |
11 | 10.0 | -- | hold |