For in-depth product & services help, ask our
Technical Information Scientists
Stock No: 001811
Protocol 18029: End Point Analysis Assay - Otc<spf-ash>-EP
Version 3.0
Notes
The genotyping protocol(s) presented here have been optimized for reagents and conditions used by The Jackson Laboratory (JAX).
To genotype animals, JAX recommends researchers validate the assay independently upon receipt of animals into their facility.
Reaction cycling temperature and times may require additional optimization based on the specific genotyping reagents used.
Expected Results
Mutant = A/A
Heterozygote =G/A
Wild type =G/G
X-linked mutation
JAX Protocol
Protocol Primers
| Primer | 5' Label | Sequence 5' → 3' | 3' Label | Primer Type | Reaction | Note |
|---|---|---|---|---|---|---|
| 18263 | CAA GAC ATT CAC TTG GGT GTG | Forward | A | |||
| 18264 | GGG GAG ACC ATT ATC TAA GGA GA | Reverse | A | |||
| 18265 | Fluorophore-1 | ACA CCG CTC GGT TTG TAA A | Quencher-1 | WT Probe | A | |
| 18266 | Fluorophore-2 | AGA CAC CGC TCA GTT TGT AAA AC | Quencher-2 | MUT Probe | A |
Reaction A
| Component | Final Concentration |
|---|---|
| Kapa Probe Fast QPCR | 1.00 X |
| ddH2O | |
| 18263 | 0.40 uM |
| 18264 | 0.40 uM |
| Wt Probe | 0.15 uM |
| Mutant Probe | 0.15 uM |
| DNA |
Cycling
| Step | Temp °C | Time | Note |
|---|---|---|---|
| 1 | 95.0 | -- | |
| 2 | 95.0 | -- | |
| 3 | 60.0 | -- | |
| 4 | -- | repeat steps 2-3 for 40 cycles | |
| 5 | 40.0 | -- | Forever |
JAX uses a very high speed Taq (~1000 bp/sec), use cycling times recommended for your reagents.
Strains Using This Protocol
This is the only strain that uses this protocol.