Protocol 40021: Sanger sequencing Assay - Bloc1s6<pa>
Version 2.0

Notes

>chr2:122742548+122742865 318bp CAGCACAGCCCTTCCTAACT TCCCATTTACAGGACCCAGA

Mut = T

WT= C

The genotyping protocol(s) presented here have been optimized for reagents and conditions used by The Jackson Laboratory (JAX). To genotype animals, JAX recommends researchers validate the assay independently upon receipt of animals into their facility. Reaction cycling temperature and times may require additional optimization based on the specific genotyping reagents used.

Expected Results

Sequence

cagcacagcccttcctaactttgtgtgtctcttgagcacagGCTTAAGCGACACGTCTCCAGATGAAGGACTGATAGAGGACTTCCCTGTGGACGATAGAGCTGTAGAGCACTTGGTGGGAGGCCTGCTGTCCCACTACTTACCAGATcTGCAGAGGTCCAAGCGAGCACTCCAGGAACTCACgtaagccaacagaaagccagcagcttgttggttccttctgtgtagtcagatgtcacctggtaatctcatggagtatgaaagtgttgtctcctggaacattgagtcatcgaacatgtctgggtcctgtaaatggga

JAX Protocol

Protocol Primers

Primer 5' Label Sequence 5' → 3' 3' Label Primer Type Reaction Note
52143 CAG CAC AGC CCT TCC TAA CT Forward A
52144 TCC CAT TTA CAG GAC CCA GA Reverse A

Reaction A

Component Final Concentration
ddH2O
Kapa 2G HS buffer 1.30 X
MgCl2 2.60 mM
dNTPS-kapa 0.26 mM
52143 0.50 uM
52144 0.50 uM
Glycerol 6.50 %
Kapa 2G HS taq polym 0.03 U/ul
DNA

Cycling

Step Temp °C Time Note
1 94.0 --
2 94.0 --
3 65.0 -- -0.5 C per cycle decrease
4 68.0 --
5 -- repeat steps 2-4 for 10 cycles (Touchdown)
6 94.0 --
7 60.0 --
8 72.0 --
9 -- repeat steps 6-8 for 28 cycles
10 72.0 --
11 10.0 -- hold
JAX uses a very high speed Taq (~1000 bp/sec), use cycling times recommended for your reagents.
JAX uses a 'touchdown' cycling protocol and therefore has not calculated the optimal annealing temperature for each set of primers.

Strains Using This Protocol

Stock Number Strain Name
000477 B10.PA-Bloc1s6pa H3e at/SnJ
000024 B6.Cg-Bloc1s6pa/J
006931 B6.Cg-Bloc1s6pa/JLlp
000305 B6.Cg-Fbn1Tsk +/+ Bloc1s6pa/J
4 strains use this protocol